%FILENAME%
r-granie-1.8.0-1-any.pkg.tar.zst

%NAME%
r-granie

%BASE%
r-granie

%VERSION%
1.8.0-1

%DESC%
Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data

%CSIZE%
7669075

%ISIZE%
13467748

%SHA256SUM%
1b8537e622cf853bd96532b33f71ef6ce3d971d60ea37717feb2b3983324a2e6

%URL%
https://bioconductor.org/packages/GRaNIE

%LICENSE%
Artistic-2.0

%ARCH%
any

%BUILDDATE%
1715019046

%PACKAGER%
BioArchLinux (on behalf of pekkarr) <pekkarr@protonmail.com>

%DEPENDS%
r-annotationhub
r-biomart
r-biostrings
r-checkmate
r-circlize
r-colorspace
r-complexheatmap
r-data.table
r-deseq2
r-dplyr
r-ensembldb
r-forcats
r-futile.logger
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gridextra
r-igraph
r-limma
r-magrittr
r-matrixstats
r-patchwork
r-progress
r-rcolorbrewer
r-readr
r-reshape2
r-rlang
r-s4vectors
r-scales
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
r-tidyselect
r-topgo
r-viridis

%OPTDEPENDS%
r-biocfilecache
r-biocparallel
r-biocstyle
r-bsgenome.dmelanogaster.ucsc.dm6
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.mmulatta.ucsc.rhemac10
r-bsgenome.mmusculus.ucsc.mm10
r-bsgenome.mmusculus.ucsc.mm9
r-bsgenome.rnorvegicus.ucsc.rn6
r-bsgenome.rnorvegicus.ucsc.rn7
r-chipseeker
r-clusterprofiler
r-csaw
r-dose
r-edaseq
r-ihw
r-jaspar2022
r-jaspar2024
r-knitr
r-ldlinkr
r-motifmatchr
r-org.dm.eg.db
r-org.hs.eg.db
r-org.mm.eg.db
r-org.mmu.eg.db
r-org.rn.eg.db
r-purrr
r-rbioapi
r-reactomepa
r-testthat
r-tfbstools
r-txdb.dmelanogaster.ucsc.dm6.ensgene
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
r-txdb.mmulatta.ucsc.rhemac10.refgene
r-txdb.mmusculus.ucsc.mm10.knowngene
r-txdb.mmusculus.ucsc.mm9.knowngene
r-txdb.rnorvegicus.ucsc.rn6.refgene
r-txdb.rnorvegicus.ucsc.rn7.refgene
r-variancepartition
r-wgcna

